Publications

Scientists regularly publish results of their research into the origins and evolution of life. The Origins Center provides you with a list of the latest and relevant publications that our members are involved with.

Changes in CO2 Adsorption Affinity Related to Ni Doping in FeS Surfaces: A DFT-D3 Study

Authors

Aleksandar Živković, Michiel Somers, Eloi Camprubi, Helen E. King, Mariette Wolthers and Nora H. de Leeuw

Publication

MDPI, 10 April 2021
Link to publication

Chemical Fueling Enables Molecular Complexification of Self-Replicators

Authors

Shuo Yang, Dr. Gael Schaeffer, Dr. Elio Mattia, Dr. Omer Markovitch, Dr. Kai Liu, Andreas S. Hussain, Jim Ottelé, Ankush Sood, Prof. Dr. Sijbren Otto

Publication

Angewandte Chemie, 10 March 2021
Link to publication

Interaction of Aromatic Molecules with Forsterite: Accuracy of the Periodic DFT-D4 Method

Authors

Dario Campisi, Thanja Lamberts, Nelson Y. Dzade, Rocco Martinazzo, Inge Loes ten Kate, and Alexander G. G. M. Tielens

Publication

The Journal of Physical Chemistry A, 30 March 2021
Link to publication

The role of planetary interior in the long-term evolution ofatmospheric CO2on Earth-like exoplanets

Authors

M. Oosterloo, D. Höning, I. E. E. Kamp, F. F. S. van der Tak

Publication

Astronomy & Astrophysics, March 2021
Link to publication

Finite representation of reaction kinetics in unbounded biopolymer structures

Authors

Yuliia Orlova, Alessa A. Gambardella, Rebecca E. Harmon, Ivan Kryven, Piet D. Iedema

Publication

Chemical Engineering Journal, 1 February 2021
Link to publication

Temperature inversions on hot super-Earths: the case of CN in nitrogen-rich atmospheres

Authors

Mantas Zilinskas, Yamila Miguel, Yipeng Lyu, Morris Bax

Publication

Monthly Notices of the Royal Astronomical Society, January 2021
Link to publication

Emergence of low-symmetry foldamers from single monomers

Authors

Charalampos G. Pappas, Pradeep K. Mandal, Bin Liu, Brice Kauffmann, Xiaoming Miao, Dávid Komáromy, Waldemar Hoffmann, Christian Manz, Rayoon Chang, Kai Liu, Kevin Pagel, Ivan Huc & Sijbren Otto

Publication

Nature Chemistry, 20 November 2020
Link to publication

Hierarchical Multivalent Effects Control Influenza Host Specificity

Authors

Nico J. Overeem, P. H. Erik Hamming, Oliver C. Grant, Daniele Di Iorio, Malte Tieke, M. Candelaria Bertolino, Zeshi Li, Gaël Vos, Robert P. de Vries, Robert J. Woods, Nicholas B. Tito, Geert-Jan P. H. Boons, Erhard van der Vries, and Jurriaan Huskens

Publication

ACS central science, 12 November 2020
Link to publication

Timing the origin of eukaryotic cellular complexity with ancient duplications

Authors

Julian Vosseberg, Jolien J. E. van Hooff, Marina Marcet-Houben, Anne van Vlimmeren, Leny M. van Wijk, Toni Gabaldón & Berend Snel

Publication

Nature Ecology & Evolution, 26 October 2020
Link to publication

Evolution of multicellularity by collective integration of spatial information

Authors

Enrico Sandro Colizzi, Renske MA Vroomans, Roeland MH Merks

Publication

eLife, October 22, 2020
Link to publication

How to Understand Cells Well Enough to Predict Evolution: Polarity Establishment in Budding Yeast as a Case Study

Authors

W.G. Daalman, E. Sweep, L. Laan

Publication

1 October 2020
Link to publication

Measuring the atomic composition of planetary building blocks

Authors

M.K. McClure, C. Dominik, M. Kama

Publication

Astronomy & Astrophysics, October 2020
Link to publication

DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Authors

Rampal Etienne, Luis Lima Valente, Albert B. Phillimore, Bart Haegeman, Joshua Lambert, Pedro Neves, Shu Xie, Richèl Bilderbeek, Torsten Hauffe, Giovanni Laudanno, Nadiah Kristensen, Raphaël Scherrer

Publication

Comprehensive R Archive Network, 27 September 2020
Link to publication

Adaptability and evolution of the cell polarization machinery in budding yeast

Authors

Fridtjof Brauns, Leila M. Iñigo de la Cruz, Werner K.-G. Daalman, Ilse de Bruin, Jacob Halatek, Liedewij Laan, Erwin Frey

Publication

bioRxiv, 10 September 2020
Link to publication

Harnessing ecological and evolutionary principles to guide the design of microbial production consortia

Authors

Samir Giri, Shraddha Shitut, Christian Kost

Publication

1 April 2020
Link to publication

Evolution of multicellularity by collective integration of spatial information

Authors

Enrico Sandro Colizzi, Renske M.A. Vroomans, Roeland M.H. Merks

Publication

February 20, 2020
Link to publication

Systems protobiology: origin of life in lipid catalytic networks

Authors

Doron Lancet, Raphael Zidovetzki and Omer Markovitch

Publication

25 juli 2018
Link to publication

Recurrent sequence evolution after independent gene duplication

Authors

Samuel H. A. von der Dunk & Berend Snel

Publication

BMC evolutionary biology, 8 August 2020
Link to publication

Bifurcation in the growth of continental crust

Authors

Dennis Höning, Nicola Tosi, Hendrik Hansen-Goos, Tilman Spohn

Publication

February 2019
Link to publication

Caught in the Act: Mechanistic Insight into Supramolecular Polymerization-Driven Self-Replication from Real-Time Visualization

Authors

Sourav Maity, Jim Ottele, Guillermo Monreal Santiago, Pim W. J. M. Frederix, Peter Kroon, Omer Markovitch, Marc C. A. Stuart, Siewert J. Marrink, Sijbren Otto, and Wouter H. Roos

Publication

31 July 2020
Link to publication

Transcriptional Mutagenesis Prevents Ribosomal DNA Deterioration: The Role of Duplications and Deletions

Authors

Enrico Sandro Colizzi, Paulien Hogeweg

Publication

25 October 2019
Link to publication

Continual evolution through coupled fast and slow feedbacks

Authors

Meike T. Wortel, Han Peters, Juan A. Bonachela, and Nils Chr. Stenseth

Publication

February 25, 2020
Link to publication

Estimated Minimum Life Span of the Jezero Fluvial Delta (Mars)

Authors

Francesco Salese, Maarten G. Kleinhans, Nicolas Mangold, Veronique Ansan, William McMahon, Tjalling de Haas, and Gilles Dromart

Publication

Astrobiology, 6 August 2020
Link to publication

The Emergence of Life

Authors

E. Camprubí, J. W. de Leeuw, C. H. House, F. Raulin, M. J. Russell, A. Spang, M. R. Tirumalai & F. Westall

Publication

12 Dec 2019
Link to publication

Chemical Heredity as Group Selection at the Molecular Level

Authors

Omer Markovitch, Olaf Witkowski, Nathaniel Virgo

Publication

22 Feb 2018
Link to publication

Perspective: Science policy through public engagement

Authors

Rafael Loureiro, Omer Markovitch, Crystal S Riley, H James Cleaves, II, I Haritina Mogoșanu, Ivan G Paulino-Lima, Jeffrey J Marlow, Sanjoy M Som

Publication

3 Sept. 2020
Link to publication

From self-replication to replicator systems en route to de novo life

Authors

Paul Adamski, Marcel Eleveld, Ankush Sood, Ádám Kun, András Szilágyi, Tamás Czárán, Eörs Szathmáry & Sijbren Otto

Publication

Nature Reviews Chemistry, 1 July 2020
Link to publication

Chance emergence of catalytic activity and promiscuity in a self-replicator

Authors

Jim Ottelé, Andreas S. Hussain, Clemens Mayer & Sijbren Otto

Publication

Nature Catalysis, 26 June 2020
Link to publication

Carbon cycling and interior evolution of water-covered plate tectonics and stagnant-lid planets.

Authors

Höning, D., Tosi, N., Spohn, T.

Publication

1 July 2019
Link to publication

Emergence of light-driven protometabolism on recruitment of a photocatalytic cofactor by a self-replicator

Authors

Guillermo Monreal Santiago, Kai Liu, Wesley R. Browne & Sijbren Otto

Publication

Nature Chemistry, 26 June 2020
Link to publication

Shannon Entropy as an Indicator for Sorting Processes in Hydrothermal Systems

Authors

Frank J. A. van Ruitenbeek, Jasper Goseling, Wim H. Bakker and Kim A. A. Hein

Publication

Entropy, 13 June 2020
Link to publication

Enrichment of the HR 8799 planets by minor bodies and dust

Authors

K. Frantseva, M. Mueller, P. Pokorný, F. F. S. van der Tak and I. L. ten Kate

Publication

Astronomy & Astrophysics 10 June 2020
Link to publication

Pleiotropy allows recovery of phenotypic plasticity in constant environments

Authors

Enzo Kingma, Eveline T. Diepeveen, Leila Iñigo de la Cruz, Liedewij Laan

Publication

bioRxiv, 2 June 2020
Link to publication

Classification of link-breaking and link-creation updating rules in susceptible-infected-susceptible epidemics on adaptive networks

Authors

Massimo A. Achterberg, Johan L. A. Dubbeldam, Cornelis J. Stam, and Piet Van Mieghem

Publication

Physical Review E, 4 May 2020
Link to publication

Atmospheric compositions and observability of nitrogen-dominated ultra-short-period super-Earths

Authors

Mantas Zilinskas, Yamila Miguel, Paul Mollière, Shang-Min Tsai

Publication

Monthly Notices of the Royal Astronomical Society, May 2020
Link to publication

Recruitment of receptors at supported lipid bilayers promoted by the multivalent binding of ligand-modified unilamellar vesicles

Authors

Daniele Di Iorio, Yao Lu, Joris Meulman and Jurriaan Huskens

Publication

Chemical Science, 9 March 2020
Link to publication

Do defects in PAHs promote catalytic activity in space? Stone–Wales pyrene as a test case

Authors

Dario Campisi and Alessandra Candian

Publication

Physical Chemistry Chemical Physics, 28 February 2020
Link to publication

A simple dynamic model explains the diversity of island birds worldwide

Authors

Luis Valente, Albert B. Phillimore, Martim Melo, Ben H. Warren, Sonya M. Clegg, Katja Havenstein, Ralph Tiedemann, Juan Carlos Illera, Christophe Thébaud, Tina Aschenbach & Rampal S. Etienne

Publication

Nature, 19 February 2020
Link to publication

Predicting Evolution Using Regulatory Architecture

Authors

Philippe Nghe, Marjon G.J. de Vos, Enzo Kingma, Manjunatha Kogenaru, Frank J. Poelwijk, Liedewij Laan, and Sander J. Tans

Publication

Annual review of biophysics, 4 February 2020
Link to publication

Patterning in Mussel Beds Explained by the Interplay of Multi-Level Selection and Spatial Self-Organization

Authors

Monique de Jager, Johan van de Koppel, Ellen J. Weerman and Franz J. Weissing

Publication

Frontiers in Ecology and Evolution, 30 January 2020
Link to publication

Elementary Growth Modes provide a molecular description of cellular self-fabrication

Authors

Daan H. de Groot, Josephus Hulshof, Bas Teusink, Frank J. Bruggeman, Robert Planqué

Publication

PLoS computational biology, 27 January 27 2020
Link to publication

Diverse outcomes of planet formation and composition around low-mass stars and brown dwarfs

Authors

Y. Miguel, A. Cridland, C. W. Ormel, J. J. Fortney, S. Ida

Publication

Monthly Notices of the Royal Astronomical Society, January 2020
Link to publication

The unstructured linker arms of MutL enable GATC site incision beyond roadblocks during initiation of DNA mismatch repair

Authors

Yannicka S. N. Mardenborough, Katerina Nitsenko, Charlie Laffeber, Camille Duboc, Enes Sahin, Audrey Quessada-Vial, Herrie H. K. Winterwerp, Titia K. Sixma, Roland Kanaar, Peter Friedhoff, Terence R. Strick, Joyce H. G. Lebbink

Publication

Nucleic acids research, 16 December 2019
Link to publication

Superhydrogenation of pentacene: the reactivity of zigzag-edges

Authors

Dario Campisi , Frederik Doktor S. Simonsen, John D. Thrower, Rijutha Jaganathan, Liv Hornekær, Rocco Martinazzo and Alexander G. G. M. Tielens

Publication

Physical Chemistry Chemical Physics, 16 December 2019
Link to publication

Carbon depletion observed inside T Tauri inner rims. Formation of icy, kilometer size planetesimals by 1 Myr

Authors

M. K. McClure

Publication

Astronomy & Astrophysics, December 2019
Link to publication

Percolation clusters of organics in interstellar ice grains as the incubators of life

Authors

Saibal Mitra

Publication

Progress in biophysics and molecular biology, December 2019
Link to publication

The common message of constraint-based optimization approaches: overflow metabolism is caused by two growth-limiting constraints

Authors

Daan H. de Groot, Julia Lischke, Riccardo Muolo, Robert Planqué, Frank J. Bruggeman & Bas Teusink

Publication

Cellular and Molecular Life Sciences, 22 November 2019
Link to publication

Influenza as a molecular walker

Authors

P. H. (Erik) Hamming, Nico J. Overeem and Jurriaan Huskens

Publication

Chemical science, 14 November 2019
Link to publication

Charge-Based Separation of Proteins Using Polyelectrolyte Complexes as Models for Membraneless Organelles

Authors

Jéré J. van Lente, Mireille M. A. E. Claessens, and Saskia Lindhoud

Publication

Biomacromolecules, 16 August 2019
Link to publication

Microbial evolutionary medicine: from theory to clinical practice

Authors

Sandra B. Andersen, B. Jesse Shapiro, Christina Vandenbroucke-Grauls, Marjon G. J. de Vos

Publication

The Lancet Infectious Diseases, 1 August 2019
Link to publication

Real-Time Assembly of Viruslike Nucleocapsids Elucidated at the Single-Particle Level

Authors

Margherita Marchetti, Douwe Kamsma, Ernesto Cazares Vargas, Armando Hernandez García, Paul van der Schoot, Renko de Vries, Gijs J. L. Wuite, and Wouter H. Roos

Publication

Nano letters, 1 August 2019
Link to publication

The ssos Pipeline: Identification of Solar System Objects in Astronomical Images

Authors

Max Mahlke, Enrique Solano, Hervé Bouy, Benoit Carry, Gijs A. Verdoes Kleijn, Emmanuel Bertin

Publication

Astronomy and Computing, 9 June 2019
Link to publication

Mosaic origin of the eukaryotic kinetochore

Authors

Eelco C. Tromer, Jolien J. E. van Hooff, Geert J. P. L. Kops, and Berend Snel

Publication

Proceedings of the National Academy of Sciences, 24 May 2019
Link to publication

Epigenetics and transcription regulation during eukaryotic diversification: the saga of TFIID

Authors

Simona V. Antonova, Jeffrey Boeren, H.T. Marc Timmers and Berend Snel

Publication

Genes & development, 23 May 2019
Link to publication

Weak Multivalent Binding of Influenza Hemagglutinin Nanoparticles at a Sialoglycan-Functionalized Supported Lipid Bilayer

Authors

Daniele Di Iorio, Mark L. Verheijden, Erhard van der Vries, Pascal Jonkheijm, and Jurriaan Huskens

Publication

ACS nano, 7 March 2019
Link to publication

Bond percolation in coloured and multiplex networks

Authors

Ivan Kryven

Publication

Nature Communications, 24 January 2019
Link to publication

The fluid membrane determines mechanics of erythrocyte extracellular vesicles and is softened in hereditary spherocytosis

Authors

Daan Vorselen, Susan M. van Dommelen, Raya Sorkin, Melissa C. Piontek, Jürgen Schiller, Sander T. Döpp, Sander A. A. Kooijmans, Brigitte A. van Oirschot, Birgitta A. Versluijs, Marc B. Bierings, Richard van Wijk, Raymond M. Schiffelers, Gijs J. L. Wuite & Wouter H. Roos

Publication

Nature communications, 23 November 2018
Link to publication

Maintaining maximal metabolic flux by gene expression control

Authors

Robert Planqué, Josephus Hulshof, Bas Teusink, Johannes C. Hendriks, Frank J. Bruggeman

Publication

PLoS computational biology, 20 September 2018
Link to publication

A suppression of differential rotation in Jupiter’s deep interior

Authors

T. Guillot, Y. Miguel, B. Militzer, W. B. Hubbard, Y. Kaspi, E. Galanti, H. Cao, R. Helled, S. M. Wahl, L. Iess, W. M. Folkner, D. J. Stevenson, J. I. Lunine, D. R. Reese, A. Biekman, M. Parisi, D. Durante, J. E. P. Connerney, S. M. Levin & S. J. Bolton

Publication

Nature, March 2018
Link to publication

The quest for cradles of life: using the fundamental metallicity relation to hunt for the most habitable type of galaxy

Authors

Pratika Dayal, Charles Cockell, Ken Rice & Anupam Mazumdar

Publication

The Astrophysical Journal Letters, 21 August 2015
Link to publication

The habitability of the Universe through 13 billion years of cosmic time

Authors

Pratika Dayal, Martin Ward & Charles Cockell

Publication

arXiv preprint, 29 June 2016
Link to publication

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